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Awesome Neuroscience
A curated list of awesome neuroscience libraries, software and any content related to the domain.
Here you can see meta information about this topic like the time we last updated this page, the original creator of the awesome list and a link to the original GitHub repository.
Thank you analyticalmonk & contributors
View Topic on GitHub:
analyticalmonk/awesome-neuroscience
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Further filter the resources on this page by type (repository/other resource), number of stars on GitHub and time of last commit in months.
Python
A Python library for creating and simulating large-scale brain models
Timeseries analysis for neuroscience data
Machine learning for NeuroImaging in Python
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Python package to access a cacophony of neuro-imaging file formats
For running psychology and neuroscience experiments
Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.
Brian is a free, open source simulator for spiking neural networks.
Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
Simulation of spiking neural networks (SNNs) using PyTorch.
Matlab
The MATLAB toolbox for MEG, EEG and iEEG analysis
Free set of Matlab and GNU Octave functions for vision and neuroscience research.
C++
Visualizer for large-scale and interactive ray-tracing of neurons
JavaScript
Web-based visualization tools for neurological data.
R
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Graph theory analysis of brain MRI data
Ebooks
Open-access electronic textbook and interactive courseware covering neuroscience in depth. Provided by the Department of Neurobiology and Anantomy at the University of Texas Medical School at Houston.
Text which provides an in-depth introduction to the main ideas in the computational cognitive neuroscience, a field which aims to understand the brain by using biologically based computational models.
Open-access electronic textbook that covers computational and theoretical neuroscience. Provided by École Polytechnique Fédérale de Lausanne (EPFL).
Blogs
Discover magazine's neuroscience blog which offers a look at the latest developments in neuroscience, psychiatry and psychology through a critical lens.
Often critical takes on the most sensationalistic recent findings in Human Brain Imaging, Cognitive Neuroscience, and Psychopharmacology.
Maintained by Scientific American, this blog typically covers one research paper in a single entry.
Forum operated by neuroscience editors at the journal, Nature.
MOOCs
NMA Computational Neuroscience course
Serves an introductory survery of topics in neuroscience and has no specific prerequisites, though some prior exposure to biology and/or chemistry can be helpful.
Introduction to the mammalian nervous system, with emphasis on the structure and function of the human brain.
Provides an introduction to basic computational methods for understanding what nervous systems do and for determining how they function.
Explores the functional organization and neurophysiology of the human central nervous system, while providing a neurobiological framework for understanding human behavior.
Communities
Neuroscience topic on Quora contains answers, often by experts, to questions ranging from basic to advanced.
List of neuroscience, psychology and cognitive science subreddits.
Newsletters
Harvard Mahoney Neuroscience Institute's quarterly e-newsletter.
A mailing list that is is intended to address the broad range of research approaches and issues involved in the general field of computational neuroscience.
Miscellaneous
A topic-centric list of HQ open datasets.
List of summer schools in neuroscience and related fields
Simulator for a historical computational model based on neurons.
Searchable database for computational neuroscience models.
Searchable database for of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances.
Interactive mindmap containing curated resources for anyone interested in learning neuroscience.
Neuroscience podcast where real neuroscientists sit down and talk about the brain.